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Sample GSM139954 Query DataSets for GSM139954
Status Public on Oct 21, 2006
Title NRMRL test replicate03, EPA61 batch092304 430A chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing MAS 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 13, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 126.3 P 0.016670
AFFX-BioB-M_at 114.6 P 0.004484
AFFX-BioB-3_at 73.6 P 0.030976
AFFX-BioC-5_at 422.6 P 0.000110
AFFX-BioC-3_at 363.9 P 0.000060
AFFX-BioDn-5_at 354.7 P 0.000081
AFFX-BioDn-3_at 1968.0 P 0.000446
AFFX-CreX-5_at 3082.0 P 0.000044
AFFX-CreX-3_at 4251.7 P 0.000044
AFFX-DapX-5_at 4.8 A 0.382599
AFFX-DapX-M_at 19.3 A 0.287743
AFFX-DapX-3_at 2.3 A 0.960339
AFFX-LysX-5_at 2.3 A 0.737173
AFFX-LysX-M_at 18.8 A 0.559354
AFFX-LysX-3_at 13.7 A 0.425962
AFFX-PheX-5_at 2.4 A 0.978098
AFFX-PheX-M_at 4.9 A 0.876428
AFFX-PheX-3_at 18.2 A 0.514890
AFFX-ThrX-5_at 3.6 A 0.941556
AFFX-ThrX-M_at 10.9 A 0.659339

Total number of rows: 22690

Table truncated, full table size 624 Kbytes.




Supplementary file Size Download File type/resource
GSM139954.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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