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Sample GSM139957 Query DataSets for GSM139957
Status Public on Oct 21, 2006
Title NRMRL test replicate04, EPA61 batch092304 430B chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing MAS 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 13, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 265.3 A 0.089478
AFFX-BioB-M_at 203.5 A 0.216524
AFFX-BioB-3_at 228.9 A 0.102165
AFFX-BioC-5_at 1103.0 P 0.000110
AFFX-BioC-3_at 874.8 P 0.000095
AFFX-BioDn-5_at 1478.0 P 0.000110
AFFX-BioDn-3_at 6292.4 P 0.000509
AFFX-CreX-5_at 9261.3 P 0.000052
AFFX-CreX-3_at 16313.1 P 0.000044
AFFX-DapX-5_at 59.4 A 0.262827
AFFX-DapX-M_at 107.9 A 0.195266
AFFX-DapX-3_at 21.4 A 0.868639
AFFX-LysX-5_at 17.7 A 0.760937
AFFX-LysX-M_at 28.5 A 0.814869
AFFX-LysX-3_at 80.9 M 0.050229
AFFX-PheX-5_at 6.2 A 0.971554
AFFX-PheX-M_at 9.5 A 0.960339
AFFX-PheX-3_at 52.2 A 0.514890
AFFX-ThrX-5_at 13.1 A 0.910522
AFFX-ThrX-M_at 38.0 A 0.631562

Total number of rows: 22575

Table truncated, full table size 613 Kbytes.




Supplementary file Size Download File type/resource
GSM139957.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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