NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM139959 Query DataSets for GSM139959
Status Public on Oct 21, 2006
Title NRMRL test replicate05, EPA61 batch092304 430B chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing MAS 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 13, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 390.3 M 0.062929
AFFX-BioB-M_at 251.7 P 0.028446
AFFX-BioB-3_at 111.1 A 0.175328
AFFX-BioC-5_at 936.3 P 0.000258
AFFX-BioC-3_at 829.7 P 0.000110
AFFX-BioDn-5_at 1334.7 P 0.000110
AFFX-BioDn-3_at 5827.1 P 0.000662
AFFX-CreX-5_at 8465.4 P 0.000052
AFFX-CreX-3_at 14077.6 P 0.000044
AFFX-DapX-5_at 61.7 A 0.165861
AFFX-DapX-M_at 128.7 A 0.108979
AFFX-DapX-3_at 24.7 A 0.804734
AFFX-LysX-5_at 25.6 A 0.659339
AFFX-LysX-M_at 24.4 A 0.672921
AFFX-LysX-3_at 56.8 A 0.313723
AFFX-PheX-5_at 10.7 A 0.937071
AFFX-PheX-M_at 6.0 A 0.973889
AFFX-PheX-3_at 43.4 A 0.603080
AFFX-ThrX-5_at 22.3 A 0.804734
AFFX-ThrX-M_at 72.4 A 0.631562

Total number of rows: 22575

Table truncated, full table size 614 Kbytes.




Supplementary file Size Download File type/resource
GSM139959.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap