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Sample GSM139960 Query DataSets for GSM139960
Status Public on Oct 21, 2006
Title NRMRL test replicate01, EPA63 batch092304 430A chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing MAS 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 13, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 92.6 A 0.185131
AFFX-BioB-M_at 73.0 A 0.275146
AFFX-BioB-3_at 81.5 A 0.067678
AFFX-BioC-5_at 268.1 P 0.000972
AFFX-BioC-3_at 179.7 P 0.000972
AFFX-BioDn-5_at 278.0 P 0.000754
AFFX-BioDn-3_at 1530.0 P 0.001248
AFFX-CreX-5_at 2270.7 P 0.000052
AFFX-CreX-3_at 2953.7 P 0.000044
AFFX-DapX-5_at 24.4 A 0.108979
AFFX-DapX-M_at 44.5 A 0.083592
AFFX-DapX-3_at 8.9 A 0.699394
AFFX-LysX-5_at 1.1 A 0.991560
AFFX-LysX-M_at 6.0 A 0.852061
AFFX-LysX-3_at 13.4 A 0.382599
AFFX-PheX-5_at 2.5 A 0.824672
AFFX-PheX-M_at 9.2 A 0.783476
AFFX-PheX-3_at 25.4 A 0.617401
AFFX-ThrX-5_at 7.9 A 0.927300
AFFX-ThrX-M_at 13.6 A 0.617401

Total number of rows: 22690

Table truncated, full table size 624 Kbytes.




Supplementary file Size Download File type/resource
GSM139960.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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