NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM139965 Query DataSets for GSM139965
Status Public on Oct 21, 2006
Title NRMRL test replicate03, EPA63 batch092304 430B chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing MAS 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 13, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 497.2 P 0.039661
AFFX-BioB-M_at 219.0 P 0.006187
AFFX-BioB-3_at 229.3 A 0.108979
AFFX-BioC-5_at 1068.0 P 0.000195
AFFX-BioC-3_at 797.1 P 0.000081
AFFX-BioDn-5_at 1221.1 P 0.000127
AFFX-BioDn-3_at 5304.7 P 0.000446
AFFX-CreX-5_at 7732.6 P 0.000052
AFFX-CreX-3_at 11426.6 P 0.000044
AFFX-DapX-5_at 65.2 A 0.227636
AFFX-DapX-M_at 60.9 A 0.165861
AFFX-DapX-3_at 20.5 A 0.860518
AFFX-LysX-5_at 8.2 A 0.772364
AFFX-LysX-M_at 20.2 A 0.860518
AFFX-LysX-3_at 24.2 A 0.485110
AFFX-PheX-5_at 9.0 A 0.937071
AFFX-PheX-M_at 12.0 A 0.927300
AFFX-PheX-3_at 105.7 A 0.425962
AFFX-ThrX-5_at 16.1 A 0.804734
AFFX-ThrX-M_at 79.0 A 0.425962

Total number of rows: 22575

Table truncated, full table size 613 Kbytes.




Supplementary file Size Download File type/resource
GSM139965.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap