NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM139972 Query DataSets for GSM139972
Status Public on Oct 21, 2006
Title NRMRL control replicate01, uninfected batch092304 430B chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hours
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing MAS 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 13, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 306.6 M 0.058444
AFFX-BioB-M_at 311.8 P 0.002556
AFFX-BioB-3_at 196.5 P 0.030976
AFFX-BioC-5_at 1075.2 P 0.000225
AFFX-BioC-3_at 901.8 P 0.000110
AFFX-BioDn-5_at 1469.6 P 0.000095
AFFX-BioDn-3_at 6159.1 P 0.000509
AFFX-CreX-5_at 8448.8 P 0.000052
AFFX-CreX-3_at 13547.0 P 0.000044
AFFX-DapX-5_at 69.2 A 0.300606
AFFX-DapX-M_at 49.2 A 0.425962
AFFX-DapX-3_at 76.4 A 0.559359
AFFX-LysX-5_at 21.3 A 0.529760
AFFX-LysX-M_at 29.3 A 0.814869
AFFX-LysX-3_at 34.2 A 0.411380
AFFX-PheX-5_at 6.7 A 0.953518
AFFX-PheX-M_at 10.9 A 0.868639
AFFX-PheX-3_at 72.3 A 0.455413
AFFX-ThrX-5_at 22.1 A 0.749204
AFFX-ThrX-M_at 55.1 A 0.588620

Total number of rows: 22575

Table truncated, full table size 613 Kbytes.




Supplementary file Size Download File type/resource
GSM139972.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap