NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM139978 Query DataSets for GSM139978
Status Public on Oct 21, 2006
Title NRMRL control replicate04, uninfected batch092304 430A chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hours
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing MAS 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 13, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 134.7 P 0.033677
AFFX-BioB-M_at 118.9 P 0.026111
AFFX-BioB-3_at 77.0 M 0.050229
AFFX-BioC-5_at 309.9 P 0.000390
AFFX-BioC-3_at 232.3 P 0.000095
AFFX-BioDn-5_at 350.8 P 0.000110
AFFX-BioDn-3_at 1787.7 P 0.000581
AFFX-CreX-5_at 2323.8 P 0.000044
AFFX-CreX-3_at 3313.5 P 0.000044
AFFX-DapX-5_at 24.5 A 0.095667
AFFX-DapX-M_at 32.3 A 0.165861
AFFX-DapX-3_at 34.1 A 0.470241
AFFX-LysX-5_at 2.3 A 0.794268
AFFX-LysX-M_at 5.9 A 0.852061
AFFX-LysX-3_at 18.9 A 0.227636
AFFX-PheX-5_at 2.2 A 0.966323
AFFX-PheX-M_at 4.2 A 0.883887
AFFX-PheX-3_at 13.9 A 0.617401
AFFX-ThrX-5_at 4.2 A 0.945787
AFFX-ThrX-M_at 10.6 A 0.514890

Total number of rows: 22690

Table truncated, full table size 623 Kbytes.




Supplementary file Size Download File type/resource
GSM139978.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap