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Sample GSM139980 Query DataSets for GSM139980
Status Public on Oct 21, 2006
Title NRMRL control replicate04, uninfected batch092304 430B chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hours
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing MAS 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 13, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 285.3 M 0.062929
AFFX-BioB-M_at 320.3 P 0.003595
AFFX-BioB-3_at 157.4 A 0.083592
AFFX-BioC-5_at 981.9 P 0.000147
AFFX-BioC-3_at 988.4 P 0.000070
AFFX-BioDn-5_at 1566.8 P 0.000070
AFFX-BioDn-3_at 5549.1 P 0.000446
AFFX-CreX-5_at 8596.9 P 0.000052
AFFX-CreX-3_at 15421.0 P 0.000044
AFFX-DapX-5_at 41.9 A 0.354453
AFFX-DapX-M_at 32.1 A 0.559354
AFFX-DapX-3_at 58.1 A 0.760937
AFFX-LysX-5_at 2.3 A 0.949771
AFFX-LysX-M_at 16.5 A 0.852061
AFFX-LysX-3_at 11.5 A 0.686277
AFFX-PheX-5_at 11.0 A 0.927300
AFFX-PheX-M_at 29.3 A 0.783476
AFFX-PheX-3_at 40.9 A 0.574038
AFFX-ThrX-5_at 20.5 A 0.904333
AFFX-ThrX-M_at 67.5 A 0.514890

Total number of rows: 22575

Table truncated, full table size 613 Kbytes.




Supplementary file Size Download File type/resource
GSM139980.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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