NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM139994 Query DataSets for GSM139994
Status Public on Oct 21, 2006
Title NRMRL control replicate03, uninfected batch052704 430B chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hours
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing MAS 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 13, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 576.0 P 0.005561
AFFX-BioB-M_at 1043.4 P 0.000340
AFFX-BioB-3_at 552.3 P 0.001796
AFFX-BioC-5_at 1962.0 P 0.000195
AFFX-BioC-3_at 1696.3 P 0.000060
AFFX-BioDn-5_at 1496.2 P 0.000060
AFFX-BioDn-3_at 9160.4 P 0.000070
AFFX-CreX-5_at 20890.7 P 0.000044
AFFX-CreX-3_at 40353.3 P 0.000044
AFFX-DapX-5_at 71.5 A 0.275146
AFFX-DapX-M_at 81.1 A 0.354453
AFFX-DapX-3_at 18.7 A 0.804734
AFFX-LysX-5_at 5.4 A 0.969024
AFFX-LysX-M_at 17.4 A 0.921998
AFFX-LysX-3_at 15.7 A 0.588620
AFFX-PheX-5_at 5.3 A 0.969024
AFFX-PheX-M_at 8.7 A 0.910522
AFFX-PheX-3_at 40.8 A 0.699394
AFFX-ThrX-5_at 21.1 A 0.891021
AFFX-ThrX-M_at 25.4 A 0.686277

Total number of rows: 22575

Table truncated, full table size 613 Kbytes.




Supplementary file Size Download File type/resource
GSM139994.CEL.gz 3.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap