NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM139996 Query DataSets for GSM139996
Status Public on Oct 21, 2006
Title NRMRL control replicate04, uninfected batch052704 430B chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing MAS 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 13, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 780.8 P 0.003595
AFFX-BioB-M_at 1225.1 P 0.000340
AFFX-BioB-3_at 354.8 P 0.011384
AFFX-BioC-5_at 1961.6 P 0.000127
AFFX-BioC-3_at 1460.3 P 0.000110
AFFX-BioDn-5_at 1086.6 P 0.000195
AFFX-BioDn-3_at 8236.5 P 0.000095
AFFX-CreX-5_at 17873.0 P 0.000044
AFFX-CreX-3_at 26672.5 P 0.000044
AFFX-DapX-5_at 84.7 A 0.195266
AFFX-DapX-M_at 78.2 A 0.262827
AFFX-DapX-3_at 25.2 A 0.737173
AFFX-LysX-5_at 5.7 A 0.814869
AFFX-LysX-M_at 21.9 A 0.927318
AFFX-LysX-3_at 32.5 A 0.500000
AFFX-PheX-5_at 7.8 A 0.937071
AFFX-PheX-M_at 16.8 A 0.868639
AFFX-PheX-3_at 31.3 A 0.672921
AFFX-ThrX-5_at 25.8 A 0.897835
AFFX-ThrX-M_at 12.0 A 0.891021

Total number of rows: 22575

Table truncated, full table size 613 Kbytes.




Supplementary file Size Download File type/resource
GSM139996.CEL.gz 3.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap