NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM140000 Query DataSets for GSM140000
Status Public on Oct 21, 2006
Title NRMRL test replicate01, EPA1HK batch052704 430B chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour treatment
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing MAS 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 13, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 620.5 P 0.008440
AFFX-BioB-M_at 1043.6 P 0.000581
AFFX-BioB-3_at 459.3 P 0.026111
AFFX-BioC-5_at 1816.1 P 0.000127
AFFX-BioC-3_at 1605.3 P 0.000052
AFFX-BioDn-5_at 1353.2 P 0.000110
AFFX-BioDn-3_at 9457.4 P 0.000095
AFFX-CreX-5_at 18668.4 P 0.000044
AFFX-CreX-3_at 34690.0 P 0.000044
AFFX-DapX-5_at 68.5 A 0.139482
AFFX-DapX-M_at 15.4 A 0.559354
AFFX-DapX-3_at 57.0 A 0.672921
AFFX-LysX-5_at 36.8 A 0.529760
AFFX-LysX-M_at 22.0 A 0.852082
AFFX-LysX-3_at 43.2 A 0.327079
AFFX-PheX-5_at 4.7 A 0.986189
AFFX-PheX-M_at 14.4 A 0.860518
AFFX-PheX-3_at 51.4 A 0.603080
AFFX-ThrX-5_at 15.2 A 0.834139
AFFX-ThrX-M_at 65.8 A 0.500000

Total number of rows: 22575

Table truncated, full table size 613 Kbytes.




Supplementary file Size Download File type/resource
GSM140000.CEL.gz 3.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap