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Sample GSM140003 Query DataSets for GSM140003
Status Public on Oct 21, 2006
Title NRMRL test replicate03, EPA1HK batch052704 430A chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour treatment
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing MAS 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 13, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 169.9 P 0.006871
AFFX-BioB-M_at 225.3 P 0.000390
AFFX-BioB-3_at 99.2 P 0.001410
AFFX-BioC-5_at 375.6 P 0.000110
AFFX-BioC-3_at 330.4 P 0.000095
AFFX-BioDn-5_at 255.7 P 0.000052
AFFX-BioDn-3_at 2154.0 P 0.000195
AFFX-CreX-5_at 3647.6 P 0.000044
AFFX-CreX-3_at 6944.5 P 0.000044
AFFX-DapX-5_at 4.5 A 0.368438
AFFX-DapX-M_at 8.2 A 0.470241
AFFX-DapX-3_at 17.1 A 0.470241
AFFX-LysX-5_at 0.7 A 0.960339
AFFX-LysX-M_at 3.0 A 0.868639
AFFX-LysX-3_at 7.6 A 0.485110
AFFX-PheX-5_at 2.6 A 0.876428
AFFX-PheX-M_at 2.9 A 0.852061
AFFX-PheX-3_at 10.7 A 0.455413
AFFX-ThrX-5_at 5.6 A 0.834139
AFFX-ThrX-M_at 13.0 A 0.354453

Total number of rows: 22690

Table truncated, full table size 623 Kbytes.




Supplementary file Size Download File type/resource
GSM140003.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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