NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM140005 Query DataSets for GSM140005
Status Public on Oct 21, 2006
Title NRMRL test replicate04, EPA1HK batch052704 430A chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour treatment
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing MAS 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 13, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 275.1 P 0.002556
AFFX-BioB-M_at 285.7 P 0.000095
AFFX-BioB-3_at 137.6 P 0.000340
AFFX-BioC-5_at 540.0 P 0.000127
AFFX-BioC-3_at 404.2 P 0.000070
AFFX-BioDn-5_at 404.0 P 0.000044
AFFX-BioDn-3_at 2648.1 P 0.000110
AFFX-CreX-5_at 5138.9 P 0.000044
AFFX-CreX-3_at 8665.1 P 0.000044
AFFX-DapX-5_at 21.3 A 0.131361
AFFX-DapX-M_at 17.4 A 0.185131
AFFX-DapX-3_at 7.8 A 0.686277
AFFX-LysX-5_at 2.1 A 0.574038
AFFX-LysX-M_at 14.1 A 0.724854
AFFX-LysX-3_at 13.7 A 0.287726
AFFX-PheX-5_at 1.5 A 0.904333
AFFX-PheX-M_at 3.1 A 0.868639
AFFX-PheX-3_at 13.3 A 0.396920
AFFX-ThrX-5_at 5.5 A 0.737173
AFFX-ThrX-M_at 9.4 A 0.500000

Total number of rows: 22690

Table truncated, full table size 623 Kbytes.




Supplementary file Size Download File type/resource
GSM140005.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap