|
| Status |
Public on Dec 14, 2006 |
| Title |
Expression data from ankle tissue of C3H mice at 1 week of infection |
| Sample type |
RNA |
| |
|
| Source name |
ankle tissue at 1 weeks of infection
|
| Organism |
Mus musculus |
| Characteristics |
C3H/HeN mice
|
| Extracted molecule |
total RNA |
| Extraction protocol |
total RNA extracted from ankle tissues
|
| Label |
biotin
|
| Label protocol |
standard Affymetrix procedure
|
| |
|
| Hybridization protocol |
standard Affymetrix procedure
|
| Scan protocol |
standard Affymetrix procedure
|
| Description |
expression during the development of arthritis
|
| Data processing |
MAS 5
Algorithm: Statistical
HZ=4 VZ=4 BG=4 SmoothFactorBG=100 Epsilon=0.5 BF= Alpha1=0.05 Alpha2=0.065 Tau=0.015 Gamma1H=0.0045 Gamma1L=0.0045 Gamma2H=0.006 Gamma2L=0.006 Perturbation=1.1 TGT=500 NF=1.000000000000 SF=14.211210250854 SFGene=All
Background=Avg:29.22,Stdev:0.63,Max:30.8,Min:28.0 Noise=Avg:1.70,Stdev:0.08,Max:1.9,Min:1.6 RawQ=1.37 Corner+=Avg:63,Count:32 Corner-=Avg:12911,Count:32 Central-=Avg:12491,Count:9
|
| |
|
| Submission date |
Oct 16, 2006 |
| Last update date |
Dec 14, 2006 |
| Contact name |
Janis Weis |
| E-mail(s) |
janis.weis@path.utah.edu
|
| Phone |
801-581-8386
|
| Fax |
801-581-4517
|
| Organization name |
University of Utah
|
| Department |
Pathology
|
| Street address |
15 North Medical Drive East
|
| City |
Salt Lake City |
| State/province |
UT |
| ZIP/Postal code |
84112-5650 |
| Country |
USA |
| |
|
| Platform ID |
GPL339 |
| Series (1) |
| GSE6055 |
Gene Expression Profiling Reveals Unique Pathways Associated with Differential Severity of Lyme Arthritis |
|
