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Sample GSM140230 Query DataSets for GSM140230
Status Public on Dec 14, 2006
Title Expression data from ankle tissue of C3H mice at 2 week of infection
Sample type RNA
 
Source name ankle tissue at 2 weeks of infection
Organism Mus musculus
Characteristics C3H/HeN mice
Extracted molecule total RNA
Extraction protocol total RNA extracted from ankle tissues
Label biotin
Label protocol standard Affymetrix procedure
 
Hybridization protocol standard Affymetrix procedure
Scan protocol standard Affymetrix procedure
Description expression during the development of arthritis
Data processing MAS 5
Algorithm: Statistical
HZ=4 VZ=4 BG=4 SmoothFactorBG=100 Epsilon=0.5 BF= Alpha1=0.05 Alpha2=0.065 Tau=0.015 Gamma1H=0.0045 Gamma1L=0.0045 Gamma2H=0.006 Gamma2L=0.006 Perturbation=1.1 TGT=500 NF=1.000000000000 SF=12.772108078003 SFGene=All
Background=Avg:28.48,Stdev:0.67,Max:29.7,Min:27.0 Noise=Avg:1.66,Stdev:0.05,Max:1.8,Min:1.6 RawQ=1.40 Corner+=Avg:103,Count:32 Corner-=Avg:12700,Count:32 Central-=Avg:12236,Count:9
 
Submission date Oct 16, 2006
Last update date Dec 14, 2006
Contact name Janis Weis
E-mail(s) janis.weis@path.utah.edu
Phone 801-581-8386
Fax 801-581-4517
Organization name University of Utah
Department Pathology
Street address 15 North Medical Drive East
City Salt Lake City
State/province UT
ZIP/Postal code 84112-5650
Country USA
 
Platform ID GPL339
Series (1)
GSE6055 Gene Expression Profiling Reveals Unique Pathways Associated with Differential Severity of Lyme Arthritis

Data table header descriptions
ID_REF
Stat Pairs
Stat Pairs Used
VALUE MAS 5 signal
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 3761.2 P 0.000060
AFFX-BioB-M_at 20 20 6019.1 P 0.000052
AFFX-BioB-3_at 20 20 3564.8 P 0.000044
AFFX-BioC-5_at 20 20 7190.6 P 0.000044
AFFX-BioC-3_at 20 20 4093.4 P 0.000044
AFFX-BioDn-5_at 20 20 9042.0 P 0.000044
AFFX-BioDn-3_at 20 20 32940.3 P 0.000052
AFFX-CreX-5_at 20 20 79069.1 P 0.000044
AFFX-CreX-3_at 20 20 89993.9 P 0.000044
AFFX-DapX-5_at 20 20 35.5 A 0.227617
AFFX-DapX-M_at 20 20 83.8 A 0.275146
AFFX-DapX-3_at 20 20 10.5 A 0.941572
AFFX-LysX-5_at 20 20 8.5 A 0.588620
AFFX-LysX-M_at 20 20 72.7 A 0.603080
AFFX-LysX-3_at 20 20 16.4 A 0.645547
AFFX-PheX-5_at 20 20 13.7 A 0.852061
AFFX-PheX-M_at 20 20 26.3 A 0.783476
AFFX-PheX-3_at 20 20 94.2 A 0.139482
AFFX-ThrX-5_at 20 20 50.6 A 0.574038
AFFX-ThrX-M_at 20 20 10.9 A 0.760937

Total number of rows: 22690

Table truncated, full table size 762 Kbytes.




Supplementary file Size Download File type/resource
GSM140230.cel.gz 3.1 Mb (ftp)(http) CEL

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