|
Status |
Public on Dec 14, 2006 |
Title |
Expression data from ankle tissue of C3H mice at 2 week of infection |
Sample type |
RNA |
|
|
Source name |
ankle tissue at 2 weeks of infection
|
Organism |
Mus musculus |
Characteristics |
C3H/HeN mice
|
Extracted molecule |
total RNA |
Extraction protocol |
total RNA extracted from ankle tissues
|
Label |
biotin
|
Label protocol |
standard Affymetrix procedure
|
|
|
Hybridization protocol |
standard Affymetrix procedure
|
Scan protocol |
standard Affymetrix procedure
|
Description |
expression during the development of arthritis
|
Data processing |
MAS 5 Algorithm: Statistical HZ=4 VZ=4 BG=4 SmoothFactorBG=100 Epsilon=0.5 BF= Alpha1=0.05 Alpha2=0.065 Tau=0.015 Gamma1H=0.0045 Gamma1L=0.0045 Gamma2H=0.006 Gamma2L=0.006 Perturbation=1.1 TGT=500 NF=1.000000000000 SF=12.772108078003 SFGene=All Background=Avg:28.48,Stdev:0.67,Max:29.7,Min:27.0 Noise=Avg:1.66,Stdev:0.05,Max:1.8,Min:1.6 RawQ=1.40 Corner+=Avg:103,Count:32 Corner-=Avg:12700,Count:32 Central-=Avg:12236,Count:9
|
|
|
Submission date |
Oct 16, 2006 |
Last update date |
Dec 14, 2006 |
Contact name |
Janis Weis |
E-mail(s) |
janis.weis@path.utah.edu
|
Phone |
801-581-8386
|
Fax |
801-581-4517
|
Organization name |
University of Utah
|
Department |
Pathology
|
Street address |
15 North Medical Drive East
|
City |
Salt Lake City |
State/province |
UT |
ZIP/Postal code |
84112-5650 |
Country |
USA |
|
|
Platform ID |
GPL339 |
Series (1) |
GSE6055 |
Gene Expression Profiling Reveals Unique Pathways Associated with Differential Severity of Lyme Arthritis |
|