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Sample GSM140551 Query DataSets for GSM140551
Status Public on Oct 21, 2006
Title NRMRL test replicate05, EPA100 batch052704 430A chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 17, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 283.7 P 0.007620
AFFX-BioB-M_at 280.0 P 0.000225
AFFX-BioB-3_at 140.5 P 0.018281
AFFX-BioC-5_at 499.3 P 0.000195
AFFX-BioC-3_at 345.7 P 0.000095
AFFX-BioDn-5_at 208.6 P 0.000081
AFFX-BioDn-3_at 2782.6 P 0.000169
AFFX-CreX-5_at 3951.7 P 0.000044
AFFX-CreX-3_at 6568.4 P 0.000044
AFFX-DapX-5_at 11.1 A 0.327079
AFFX-DapX-M_at 18.8 A 0.287743
AFFX-DapX-3_at 16.8 A 0.659339
AFFX-LysX-5_at 6.0 A 0.544591
AFFX-LysX-M_at 4.4 A 0.897835
AFFX-LysX-3_at 9.7 A 0.300606
AFFX-PheX-5_at 1.8 A 0.932322
AFFX-PheX-M_at 19.7 A 0.672921
AFFX-PheX-3_at 9.8 A 0.783476
AFFX-ThrX-5_at 6.3 A 0.843268
AFFX-ThrX-M_at 4.5 A 0.712274

Total number of rows: 22690

Table truncated, full table size 622 Kbytes.




Supplementary file Size Download File type/resource
GSM140551.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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