NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM140553 Query DataSets for GSM140553
Status Public on Oct 21, 2006
Title NRMRL test replicate01, EPA73 batch052704 430A chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 17, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 154.1 P 0.020022
AFFX-BioB-M_at 189.5 P 0.003212
AFFX-BioB-3_at 107.1 P 0.012547
AFFX-BioC-5_at 368.2 P 0.000258
AFFX-BioC-3_at 278.4 P 0.000070
AFFX-BioDn-5_at 253.8 P 0.000081
AFFX-BioDn-3_at 1843.1 P 0.000147
AFFX-CreX-5_at 3705.0 P 0.000044
AFFX-CreX-3_at 7261.4 P 0.000044
AFFX-DapX-5_at 8.2 A 0.382599
AFFX-DapX-M_at 21.2 A 0.396920
AFFX-DapX-3_at 7.0 A 0.737173
AFFX-LysX-5_at 4.9 A 0.645547
AFFX-LysX-M_at 4.5 A 0.672921
AFFX-LysX-3_at 33.7 A 0.116113
AFFX-PheX-5_at 5.3 A 0.843268
AFFX-PheX-M_at 5.5 A 0.904333
AFFX-PheX-3_at 10.0 A 0.617401
AFFX-ThrX-5_at 2.9 A 0.941556
AFFX-ThrX-M_at 9.4 A 0.485110

Total number of rows: 22690

Table truncated, full table size 623 Kbytes.




Supplementary file Size Download File type/resource
GSM140553.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap