NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM140560 Query DataSets for GSM140560
Status Public on Oct 21, 2006
Title NRMRL test replicate04, EPA73 batch052704 430B chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hours infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 17, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 677.8 P 0.010317
AFFX-BioB-M_at 851.7 P 0.000127
AFFX-BioB-3_at 446.9 P 0.001593
AFFX-BioC-5_at 1666.6 P 0.000127
AFFX-BioC-3_at 1044.2 P 0.000147
AFFX-BioDn-5_at 1178.5 P 0.000070
AFFX-BioDn-3_at 8853.2 P 0.000127
AFFX-CreX-5_at 16597.6 P 0.000044
AFFX-CreX-3_at 34442.1 P 0.000044
AFFX-DapX-5_at 57.7 A 0.300606
AFFX-DapX-M_at 81.3 A 0.216524
AFFX-DapX-3_at 74.5 A 0.737173
AFFX-LysX-5_at 4.7 A 0.724854
AFFX-LysX-M_at 23.6 A 0.814869
AFFX-LysX-3_at 45.3 A 0.574038
AFFX-PheX-5_at 8.0 A 0.891021
AFFX-PheX-M_at 7.3 A 0.932322
AFFX-PheX-3_at 39.7 A 0.559354
AFFX-ThrX-5_at 48.3 A 0.645547
AFFX-ThrX-M_at 59.7 A 0.529760

Total number of rows: 22575

Table truncated, full table size 612 Kbytes.




Supplementary file Size Download File type/resource
GSM140560.CEL.gz 3.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap