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Sample GSM140569 Query DataSets for GSM140569
Status Public on Oct 21, 2006
Title NRMRL test replicate05, EPA73 batch052704 430A chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 17, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 186.2 P 0.011384
AFFX-BioB-M_at 229.3 P 0.000662
AFFX-BioB-3_at 94.5 P 0.015183
AFFX-BioC-5_at 357.6 P 0.000195
AFFX-BioC-3_at 215.4 P 0.000127
AFFX-BioDn-5_at 220.8 P 0.000060
AFFX-BioDn-3_at 1839.1 P 0.000195
AFFX-CreX-5_at 3041.3 P 0.000044
AFFX-CreX-3_at 5578.1 P 0.000044
AFFX-DapX-5_at 25.4 A 0.078002
AFFX-DapX-M_at 17.3 A 0.250796
AFFX-DapX-3_at 9.2 A 0.814869
AFFX-LysX-5_at 1.0 A 0.963431
AFFX-LysX-M_at 4.1 A 0.883887
AFFX-LysX-3_at 5.4 A 0.772364
AFFX-PheX-5_at 2.7 A 0.897835
AFFX-PheX-M_at 8.9 A 0.883887
AFFX-PheX-3_at 10.4 A 0.631562
AFFX-ThrX-5_at 10.9 A 0.760937
AFFX-ThrX-M_at 25.9 A 0.156732

Total number of rows: 22690

Table truncated, full table size 622 Kbytes.




Supplementary file Size Download File type/resource
GSM140569.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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