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Sample GSM140578 Query DataSets for GSM140578
Status Public on Oct 21, 2006
Title NRMRL test replicate04, EPA71 batch052704 430B chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 17, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 936.2 P 0.009337
AFFX-BioB-M_at 681.8 P 0.000258
AFFX-BioB-3_at 303.3 P 0.046482
AFFX-BioC-5_at 1671.8 P 0.000147
AFFX-BioC-3_at 1244.4 P 0.000390
AFFX-BioDn-5_at 873.4 P 0.000095
AFFX-BioDn-3_at 7763.4 P 0.000095
AFFX-CreX-5_at 15426.2 P 0.000044
AFFX-CreX-3_at 27906.7 P 0.000044
AFFX-DapX-5_at 107.9 A 0.175328
AFFX-DapX-M_at 29.8 A 0.617401
AFFX-DapX-3_at 170.7 A 0.340661
AFFX-LysX-5_at 9.5 A 0.891041
AFFX-LysX-M_at 13.5 A 0.949771
AFFX-LysX-3_at 69.8 A 0.205732
AFFX-PheX-5_at 16.6 A 0.897835
AFFX-PheX-M_at 10.2 A 0.737173
AFFX-PheX-3_at 33.9 A 0.794268
AFFX-ThrX-5_at 21.4 A 0.891021
AFFX-ThrX-M_at 22.0 A 0.783476

Total number of rows: 22575

Table truncated, full table size 613 Kbytes.




Supplementary file Size Download File type/resource
GSM140578.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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