NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM140586 Query DataSets for GSM140586
Status Public on Oct 21, 2006
Title NRMRL control replicate03, uninfected batch092303 430B chip
Sample type RNA
 
Source name noenatal mouse small intestinal tissue, 5 houors
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 17, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 967.9 P
AFFX-BioB-M_at 1523.6 P
AFFX-BioB-3_at 764.8 P
AFFX-BioC-5_at 2398.8 P
AFFX-BioC-3_at 1330.9 P
AFFX-BioDn-5_at 1692.9 P
AFFX-BioDn-3_at 10270.0 P
AFFX-CreX-5_at 17313.8 P
AFFX-CreX-3_at 30184.6 P
AFFX-DapX-5_at 2693.7 P
AFFX-DapX-M_at 3736.7 P
AFFX-DapX-3_at 4182.2 P
AFFX-LysX-5_at 272.7 P
AFFX-LysX-M_at 668.2 A
AFFX-LysX-3_at 556.0 P
AFFX-PheX-5_at 390.9 P
AFFX-PheX-M_at 326.7 P
AFFX-PheX-3_at 586.3 P
AFFX-ThrX-5_at 539.8 P
AFFX-ThrX-M_at 846.1 P

Total number of rows: 22575

Table truncated, full table size 421 Kbytes.




Supplementary file Size Download File type/resource
GSM140586.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap