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Sample GSM140589 Query DataSets for GSM140589
Status Public on Oct 21, 2006
Title NRMRL test replicate02, EPA5 batch092303 430A chip
Sample type RNA
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
Submission date Oct 17, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
VALUE normalized intensity value
ABS_CALL present, absent marginal call

Data table
AFFX-BioB-5_at 215.0 P
AFFX-BioB-M_at 495.4 P
AFFX-BioB-3_at 224.1 P
AFFX-BioC-5_at 644.2 P
AFFX-BioC-3_at 434.7 P
AFFX-BioDn-5_at 566.6 P
AFFX-BioDn-3_at 3079.4 P
AFFX-CreX-5_at 5693.9 P
AFFX-CreX-3_at 9131.8 P
AFFX-DapX-5_at 3.2 A
AFFX-DapX-M_at 12.1 A
AFFX-DapX-3_at 21.0 A
AFFX-LysX-5_at 3.2 A
AFFX-LysX-M_at 6.2 A
AFFX-LysX-3_at 12.6 A
AFFX-PheX-5_at 3.4 A
AFFX-PheX-M_at 1.9 A
AFFX-PheX-3_at 18.7 A
AFFX-ThrX-5_at 7.9 A
AFFX-ThrX-M_at 18.4 A

Total number of rows: 22690

Table truncated, full table size 429 Kbytes.

Supplementary file Size Download File type/resource
GSM140589.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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