NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM140594 Query DataSets for GSM140594
Status Public on Oct 21, 2006
Title NRMRL test replicate01, EPA2 batch022304 430B chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 17, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal value

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1832.0 P
AFFX-BioB-M_at 3351.8 P
AFFX-BioB-3_at 935.6 P
AFFX-BioC-5_at 4410.2 P
AFFX-BioC-3_at 3340.5 P
AFFX-BioDn-5_at 2893.4 P
AFFX-BioDn-3_at 22052.8 P
AFFX-CreX-5_at 43297.3 P
AFFX-CreX-3_at 63020.3 P
AFFX-DapX-5_at 3169.0 P
AFFX-DapX-M_at 3777.1 P
AFFX-DapX-3_at 5207.9 P
AFFX-LysX-5_at 260.6 P
AFFX-LysX-M_at 614.0 A
AFFX-LysX-3_at 733.4 P
AFFX-PheX-5_at 443.6 P
AFFX-PheX-M_at 374.6 P
AFFX-PheX-3_at 723.4 P
AFFX-ThrX-5_at 508.0 P
AFFX-ThrX-M_at 972.7 P

Total number of rows: 22575

Table truncated, full table size 420 Kbytes.




Supplementary file Size Download File type/resource
GSM140594.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap