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Sample GSM140598 Query DataSets for GSM140598
Status Public on Oct 21, 2006
Title NRMRL test replicate03, EPA2 batch022304 430B chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 17, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1696.1 P
AFFX-BioB-M_at 2565.8 P
AFFX-BioB-3_at 1197.3 P
AFFX-BioC-5_at 5110.6 P
AFFX-BioC-3_at 2477.6 P
AFFX-BioDn-5_at 2851.6 P
AFFX-BioDn-3_at 15984.1 P
AFFX-CreX-5_at 38569.1 P
AFFX-CreX-3_at 60798.5 P
AFFX-DapX-5_at 1418.5 P
AFFX-DapX-M_at 2171.4 P
AFFX-DapX-3_at 3435.4 P
AFFX-LysX-5_at 65.0 A
AFFX-LysX-M_at 403.7 A
AFFX-LysX-3_at 598.7 P
AFFX-PheX-5_at 218.2 A
AFFX-PheX-M_at 224.6 A
AFFX-PheX-3_at 524.0 P
AFFX-ThrX-5_at 285.0 A
AFFX-ThrX-M_at 543.5 P

Total number of rows: 22575

Table truncated, full table size 420 Kbytes.




Supplementary file Size Download File type/resource
GSM140598.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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