GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM140599 Query DataSets for GSM140599
Status Public on Oct 21, 2006
Title NRMRL test replicate04, EPA2 batch022304 430A chip
Sample type RNA
Source name neonatal mouse small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
Submission date Oct 17, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
VALUE normalized intensity value
ABS_CALL present, absent marginal call

Data table
AFFX-BioB-5_at 183.9 P
AFFX-BioB-M_at 273.2 P
AFFX-BioB-3_at 98.8 P
AFFX-BioC-5_at 454.5 P
AFFX-BioC-3_at 311.8 P
AFFX-BioDn-5_at 239.2 P
AFFX-BioDn-3_at 1995.4 P
AFFX-CreX-5_at 3838.8 P
AFFX-CreX-3_at 5404.4 P
AFFX-DapX-5_at 1042.7 P
AFFX-DapX-M_at 1469.9 P
AFFX-DapX-3_at 1903.9 P
AFFX-LysX-5_at 69.7 P
AFFX-LysX-M_at 228.9 P
AFFX-LysX-3_at 222.7 P
AFFX-PheX-5_at 153.3 P
AFFX-PheX-M_at 177.6 P
AFFX-PheX-3_at 268.2 P
AFFX-ThrX-5_at 190.7 P
AFFX-ThrX-M_at 301.7 P

Total number of rows: 22690

Table truncated, full table size 418 Kbytes.

Supplementary file Size Download File type/resource
GSM140599.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap