NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM140604 Query DataSets for GSM140604
Status Public on Oct 21, 2006
Title NRMRL test replicate02, EPA1 batch022304 430B chip
Sample type RNA
 
Source name neonatal mouse small intestinal tissue, 5 hours infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 17, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1122.3 P
AFFX-BioB-M_at 1310.1 P
AFFX-BioB-3_at 901.9 P
AFFX-BioC-5_at 2898.6 P
AFFX-BioC-3_at 1858.4 P
AFFX-BioDn-5_at 2097.4 P
AFFX-BioDn-3_at 13900.1 P
AFFX-CreX-5_at 26144.5 P
AFFX-CreX-3_at 45693.2 P
AFFX-DapX-5_at 1926.6 P
AFFX-DapX-M_at 4168.0 P
AFFX-DapX-3_at 5516.6 P
AFFX-LysX-5_at 212.9 P
AFFX-LysX-M_at 582.5 A
AFFX-LysX-3_at 686.4 P
AFFX-PheX-5_at 363.3 P
AFFX-PheX-M_at 373.9 P
AFFX-PheX-3_at 952.4 P
AFFX-ThrX-5_at 406.6 P
AFFX-ThrX-M_at 986.7 P

Total number of rows: 22575

Table truncated, full table size 419 Kbytes.




Supplementary file Size Download File type/resource
GSM140604.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap