GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM140616 Query DataSets for GSM140616
Status Public on Oct 21, 2006
Title NRMRL control replicate02, uninfected batch022304 430A chip
Sample type RNA
Source name neonatal mouse small intestinal tissue, 5 hours
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
Submission date Oct 17, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
VALUE normalized intensity value
ABS_CALL present, absent marginal call

Data table
AFFX-BioB-5_at 182.9 P
AFFX-BioB-M_at 337.9 P
AFFX-BioB-3_at 141.0 P
AFFX-BioC-5_at 443.9 P
AFFX-BioC-3_at 292.3 P
AFFX-BioDn-5_at 295.2 P
AFFX-BioDn-3_at 2093.1 P
AFFX-CreX-5_at 3671.4 P
AFFX-CreX-3_at 6393.4 P
AFFX-DapX-5_at 3390.0 P
AFFX-DapX-M_at 5169.7 P
AFFX-DapX-3_at 6963.1 P
AFFX-LysX-5_at 506.9 P
AFFX-LysX-M_at 835.8 P
AFFX-LysX-3_at 1569.6 P
AFFX-PheX-5_at 1033.4 P
AFFX-PheX-M_at 1045.8 P
AFFX-PheX-3_at 1544.1 P
AFFX-ThrX-5_at 950.9 P
AFFX-ThrX-M_at 1697.4 P

Total number of rows: 22690

Table truncated, full table size 424 Kbytes.

Supplementary file Size Download File type/resource
GSM140616.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap