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Sample GSM140617 Query DataSets for GSM140617
Status Public on Oct 21, 2006
Title NRMRL control replicate02, uninfected batch022304 430B chip
Sample type RNA
Source name neonatal mouse small intestinal tissue
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
Submission date Oct 17, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
VALUE normalized intensity value
ABS_CALL present, absent marginal call

Data table
AFFX-BioB-5_at 1716.4 P
AFFX-BioB-M_at 2067.9 P
AFFX-BioB-3_at 1024.0 P
AFFX-BioC-5_at 3508.1 P
AFFX-BioC-3_at 2296.9 P
AFFX-BioDn-5_at 2205.2 P
AFFX-BioDn-3_at 14021.7 P
AFFX-CreX-5_at 26605.4 P
AFFX-CreX-3_at 45036.5 P
AFFX-DapX-5_at 26827.5 P
AFFX-DapX-M_at 44149.4 P
AFFX-DapX-3_at 56792.1 P
AFFX-LysX-5_at 3370.6 P
AFFX-LysX-M_at 6231.8 P
AFFX-LysX-3_at 10990.7 P
AFFX-PheX-5_at 5974.6 P
AFFX-PheX-M_at 6915.1 P
AFFX-PheX-3_at 11659.5 P
AFFX-ThrX-5_at 7737.9 P
AFFX-ThrX-M_at 12011.9 P

Total number of rows: 22575

Table truncated, full table size 420 Kbytes.

Supplementary file Size Download File type/resource
GSM140617.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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