GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM140623 Query DataSets for GSM140623
Status Public on Oct 21, 2006
Title NRMRL control replicate05, uninfected batch022304 430A chip
Sample type RNA
Source name neonatal mouse small intestinal tissue, 5 hours
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
Submission date Oct 17, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
VALUE normalized intensity value
ABS_CALL present, absent marginal call

Data table
AFFX-BioB-5_at 152.6 P
AFFX-BioB-M_at 300.6 P
AFFX-BioB-3_at 103.7 P
AFFX-BioC-5_at 380.8 P
AFFX-BioC-3_at 255.8 P
AFFX-BioDn-5_at 186.5 P
AFFX-BioDn-3_at 1734.1 P
AFFX-CreX-5_at 2542.7 P
AFFX-CreX-3_at 4213.7 P
AFFX-DapX-5_at 356.4 P
AFFX-DapX-M_at 575.5 P
AFFX-DapX-3_at 1047.0 P
AFFX-LysX-5_at 39.7 P
AFFX-LysX-M_at 103.4 P
AFFX-LysX-3_at 79.5 P
AFFX-PheX-5_at 65.0 P
AFFX-PheX-M_at 67.6 P
AFFX-PheX-3_at 170.3 P
AFFX-ThrX-5_at 72.3 P
AFFX-ThrX-M_at 113.7 P

Total number of rows: 22690

Table truncated, full table size 423 Kbytes.

Supplementary file Size Download File type/resource
GSM140623.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap