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Sample GSM1406250 Query DataSets for GSM1406250
Status Public on Jun 10, 2014
Title normal saline 4
Sample type RNA
 
Source name normal saline 4
Organism Mus musculus
Characteristics gender: male
tissue: brain
Treatment protocol 120 mg/kg methanol (350 mcL) and 350 mcL of normal saline solution
Growth protocol -
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Jun 09, 2014
Last update date Jun 10, 2014
Contact name Anastasia Shindyapina
E-mail(s) shindyapina.a@gmail.com
Organization name MSU Lomonosov
Department Biengineering
Street address Mosfilmovskaya 76
City Moscow
State/province Moscow
ZIP/Postal code 119192
Country Russia
 
Platform ID GPL6885
Series (1)
GSE58303 Mouse brain tissue after methanol and normal saline treatment

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1088.7 0
ILMN_2721178 408.5 0
ILMN_3033922 813.9 0
ILMN_3092673 2544.5 0
ILMN_2816356 156.5 0.61654
ILMN_2808939 479.3 0
ILMN_2634564 287.8 0
ILMN_2737647 182.7 0.09774
ILMN_2734484 489.6 0
ILMN_2952292 202.5 0.00251
ILMN_2699078 166.5 0.39348
ILMN_1213681 358.6 0
ILMN_2735413 151.8 0.7218
ILMN_2735415 141.1 0.90351
ILMN_2891688 464.7 0
ILMN_2637698 906.5 0
ILMN_2674228 255.4 0
ILMN_2601546 169 0.33584
ILMN_1230831 157.8 0.58897
ILMN_2848071 154.7 0.65664

Total number of rows: 25697

Table truncated, full table size 617 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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