NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM140702 Query DataSets for GSM140702
Status Public on Oct 21, 2006
Title NRMRL test replicate01, EPA100 batch072104 430A chip
Sample type RNA
 
Source name mouse small intestinal cell cuture, 5 hour infection
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 18, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 50.1 A 0.165861
AFFX-BioB-M_at 51.1 M 0.050229
AFFX-BioB-3_at 9.3 A 0.514890
AFFX-BioC-5_at 255.8 P 0.000225
AFFX-BioC-3_at 158.6 P 0.000095
AFFX-BioDn-5_at 256.5 P 0.000169
AFFX-BioDn-3_at 1511.1 P 0.000390
AFFX-CreX-5_at 2856.9 P 0.000070
AFFX-CreX-3_at 4138.5 P 0.000044
AFFX-DapX-5_at 26.5 A 0.156732
AFFX-DapX-M_at 4.2 A 0.440646
AFFX-DapX-3_at 3.2 A 0.971543
AFFX-LysX-5_at 1.0 A 0.897835
AFFX-LysX-M_at 17.1 A 0.686277
AFFX-LysX-3_at 2.4 A 0.760937
AFFX-PheX-5_at 1.5 A 0.987453
AFFX-PheX-M_at 3.5 A 0.883887
AFFX-PheX-3_at 28.4 A 0.354453
AFFX-ThrX-5_at 5.2 A 0.843268
AFFX-ThrX-M_at 7.0 A 0.485110

Total number of rows: 22690

Table truncated, full table size 621 Kbytes.




Supplementary file Size Download File type/resource
GSM140702.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap