NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM140704 Query DataSets for GSM140704
Status Public on Oct 21, 2006
Title NRMRL test replicate02, EPA100 batch072104 430A chip
Sample type RNA
 
Source name mouse small intestinal cell culture, 5 hour infection
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 18, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 66.6 A 0.089478
AFFX-BioB-M_at 45.9 A 0.131361
AFFX-BioB-3_at 28.8 A 0.195266
AFFX-BioC-5_at 287.4 P 0.000195
AFFX-BioC-3_at 174.4 P 0.000052
AFFX-BioDn-5_at 280.6 P 0.000225
AFFX-BioDn-3_at 1680.7 P 0.000446
AFFX-CreX-5_at 2831.0 P 0.000052
AFFX-CreX-3_at 4435.1 P 0.000044
AFFX-DapX-5_at 13.1 A 0.396920
AFFX-DapX-M_at 32.9 P 0.042962
AFFX-DapX-3_at 2.6 A 0.984825
AFFX-LysX-5_at 11.2 A 0.749204
AFFX-LysX-M_at 4.3 A 0.927300
AFFX-LysX-3_at 4.2 A 0.712257
AFFX-PheX-5_at 3.5 A 0.937071
AFFX-PheX-M_at 3.5 A 0.852061
AFFX-PheX-3_at 11.5 A 0.500000
AFFX-ThrX-5_at 10.5 A 0.772364
AFFX-ThrX-M_at 4.6 A 0.804734

Total number of rows: 22690

Table truncated, full table size 620 Kbytes.




Supplementary file Size Download File type/resource
GSM140704.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap