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Sample GSM140705 Query DataSets for GSM140705
Status Public on Oct 21, 2006
Title NRMRL test replicate02, EPA100 batch072104 430B chip
Sample type RNA
 
Source name mouse small intestinal cell culture, 5 hour infection
Organism Mus musculus
Characteristics MICcl2
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 18, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 357.0 A 0.139482
AFFX-BioB-M_at 336.2 M 0.050229
AFFX-BioB-3_at 213.5 A 0.083592
AFFX-BioC-5_at 1176.9 P 0.000225
AFFX-BioC-3_at 1155.4 P 0.000052
AFFX-BioDn-5_at 1661.4 P 0.000110
AFFX-BioDn-3_at 8036.4 P 0.000340
AFFX-CreX-5_at 15565.8 P 0.000060
AFFX-CreX-3_at 24676.5 P 0.000044
AFFX-DapX-5_at 13.0 A 0.485110
AFFX-DapX-M_at 44.5 A 0.574038
AFFX-DapX-3_at 65.2 A 0.686277
AFFX-LysX-5_at 3.3 A 0.995005
AFFX-LysX-M_at 19.0 A 0.932322
AFFX-LysX-3_at 17.8 A 0.749204
AFFX-PheX-5_at 11.3 A 0.945787
AFFX-PheX-M_at 14.6 A 0.891021
AFFX-PheX-3_at 86.4 A 0.425962
AFFX-ThrX-5_at 18.2 A 0.921998
AFFX-ThrX-M_at 23.6 A 0.783476

Total number of rows: 22575

Table truncated, full table size 612 Kbytes.




Supplementary file Size Download File type/resource
GSM140705.CEL.gz 3.2 Mb (ftp)(http) CEL

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