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Sample GSM140707 Query DataSets for GSM140707
Status Public on Oct 21, 2006
Title NRMRL test replicate03, EPA100 batch072104 430B chip
Sample type RNA
 
Source name mouse small intestinal cell culture, 5 hour infection
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 18, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 290.9 A 0.175328
AFFX-BioB-M_at 303.1 P 0.028457
AFFX-BioB-3_at 56.6 A 0.425962
AFFX-BioC-5_at 1409.7 P 0.000225
AFFX-BioC-3_at 1302.9 P 0.000044
AFFX-BioDn-5_at 1631.5 P 0.000095
AFFX-BioDn-3_at 9649.3 P 0.000340
AFFX-CreX-5_at 19483.0 P 0.000070
AFFX-CreX-3_at 32438.2 P 0.000044
AFFX-DapX-5_at 84.5 A 0.287743
AFFX-DapX-M_at 146.3 A 0.131361
AFFX-DapX-3_at 12.3 A 0.973889
AFFX-LysX-5_at 14.6 A 0.783476
AFFX-LysX-M_at 113.6 A 0.603080
AFFX-LysX-3_at 31.2 A 0.686277
AFFX-PheX-5_at 10.8 A 0.876510
AFFX-PheX-M_at 12.9 A 0.927300
AFFX-PheX-3_at 191.7 A 0.327079
AFFX-ThrX-5_at 39.6 A 0.804734
AFFX-ThrX-M_at 95.3 A 0.645547

Total number of rows: 22575

Table truncated, full table size 613 Kbytes.




Supplementary file Size Download File type/resource
GSM140707.CEL.gz 3.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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