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Sample GSM140708 Query DataSets for GSM140708
Status Public on Oct 21, 2006
Title NRMRL test replicate04, EPA100 batch072104 430A chip
Sample type RNA
 
Source name mouse small intestinal cell culture, 5 hour infection
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 18, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 56.2 A 0.205732
AFFX-BioB-M_at 46.9 A 0.216524
AFFX-BioB-3_at 35.1 A 0.313723
AFFX-BioC-5_at 230.2 P 0.000390
AFFX-BioC-3_at 166.7 P 0.000169
AFFX-BioDn-5_at 272.0 P 0.000662
AFFX-BioDn-3_at 1655.5 P 0.000662
AFFX-CreX-5_at 3146.7 P 0.000060
AFFX-CreX-3_at 5317.2 P 0.000044
AFFX-DapX-5_at 5.0 A 0.617401
AFFX-DapX-M_at 23.4 A 0.382599
AFFX-DapX-3_at 19.2 A 0.824672
AFFX-LysX-5_at 21.0 A 0.313723
AFFX-LysX-M_at 3.6 A 0.843268
AFFX-LysX-3_at 4.1 A 0.737173
AFFX-PheX-5_at 2.8 A 0.927300
AFFX-PheX-M_at 3.0 A 0.949771
AFFX-PheX-3_at 21.3 A 0.500000
AFFX-ThrX-5_at 9.1 A 0.659339
AFFX-ThrX-M_at 32.2 A 0.529760

Total number of rows: 22690

Table truncated, full table size 621 Kbytes.




Supplementary file Size Download File type/resource
GSM140708.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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