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Sample GSM140709 Query DataSets for GSM140709
Status Public on Oct 21, 2006
Title NRMRL test replicate04, EPA100 batch072104 430B chip
Sample type RNA
 
Source name mouse small intestinal cell culture, 5 hour infection
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 18, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 385.5 A 0.147939
AFFX-BioB-M_at 342.0 P 0.018281
AFFX-BioB-3_at 115.6 A 0.313723
AFFX-BioC-5_at 1418.8 P 0.000340
AFFX-BioC-3_at 1122.5 P 0.000060
AFFX-BioDn-5_at 1861.8 P 0.000095
AFFX-BioDn-3_at 8588.4 P 0.000340
AFFX-CreX-5_at 17384.3 P 0.000060
AFFX-CreX-3_at 27895.8 P 0.000044
AFFX-DapX-5_at 6.5 A 0.617401
AFFX-DapX-M_at 44.3 A 0.603080
AFFX-DapX-3_at 29.4 A 0.876428
AFFX-LysX-5_at 51.1 A 0.559359
AFFX-LysX-M_at 52.4 A 0.672921
AFFX-LysX-3_at 56.0 A 0.659339
AFFX-PheX-5_at 6.2 A 0.973889
AFFX-PheX-M_at 6.2 A 0.971543
AFFX-PheX-3_at 231.4 A 0.368438
AFFX-ThrX-5_at 20.5 A 0.957038
AFFX-ThrX-M_at 40.4 A 0.814869

Total number of rows: 22575

Table truncated, full table size 613 Kbytes.




Supplementary file Size Download File type/resource
GSM140709.CEL.gz 3.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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