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Sample GSM140710 Query DataSets for GSM140710
Status Public on Oct 21, 2006
Title NRMRL test replicate05, EPA100 batch072104 430A chip
Sample type RNA
 
Source name mouse small intestinal cell culture, 5 hour infection
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 18, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 50.0 A 0.156732
AFFX-BioB-M_at 8.4 A 0.760937
AFFX-BioB-3_at 40.2 A 0.195266
AFFX-BioC-5_at 205.8 P 0.000446
AFFX-BioC-3_at 159.7 P 0.000060
AFFX-BioDn-5_at 259.2 P 0.000581
AFFX-BioDn-3_at 1334.3 P 0.000446
AFFX-CreX-5_at 2581.7 P 0.000060
AFFX-CreX-3_at 4290.5 P 0.000044
AFFX-DapX-5_at 4.9 A 0.340661
AFFX-DapX-M_at 31.7 A 0.300606
AFFX-DapX-3_at 4.4 A 0.941556
AFFX-LysX-5_at 11.4 A 0.699394
AFFX-LysX-M_at 9.6 A 0.712257
AFFX-LysX-3_at 4.6 A 0.544587
AFFX-PheX-5_at 1.5 A 0.960339
AFFX-PheX-M_at 5.0 A 0.868639
AFFX-PheX-3_at 35.1 A 0.411380
AFFX-ThrX-5_at 3.9 A 0.978098
AFFX-ThrX-M_at 17.6 A 0.514890

Total number of rows: 22690

Table truncated, full table size 622 Kbytes.




Supplementary file Size Download File type/resource
GSM140710.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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