NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM140714 Query DataSets for GSM140714
Status Public on Oct 21, 2006
Title NRMRL test replicate02, EPA73 batch072104 430A chip
Sample type RNA
 
Source name mouse small intestinal cell culture, 5 hour infection
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 18, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 201.8 P 0.013811
AFFX-BioB-M_at 200.5 P 0.000754
AFFX-BioB-3_at 78.0 P 0.042948
AFFX-BioC-5_at 658.4 P 0.000081
AFFX-BioC-3_at 657.3 P 0.000070
AFFX-BioDn-5_at 704.8 P 0.000044
AFFX-BioDn-3_at 3750.7 P 0.000070
AFFX-CreX-5_at 8851.2 P 0.000044
AFFX-CreX-3_at 10507.9 P 0.000044
AFFX-DapX-5_at 11.7 A 0.724871
AFFX-DapX-M_at 59.9 A 0.175328
AFFX-DapX-3_at 7.5 A 0.860538
AFFX-LysX-5_at 2.6 A 0.979978
AFFX-LysX-M_at 15.0 A 0.761014
AFFX-LysX-3_at 26.3 A 0.368438
AFFX-PheX-5_at 5.9 A 0.910522
AFFX-PheX-M_at 4.9 A 0.957038
AFFX-PheX-3_at 44.7 A 0.396920
AFFX-ThrX-5_at 8.6 A 0.824672
AFFX-ThrX-M_at 29.0 A 0.455413

Total number of rows: 22690

Table truncated, full table size 622 Kbytes.




Supplementary file Size Download File type/resource
GSM140714.CEL.gz 3.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap