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Sample GSM140715 Query DataSets for GSM140715
Status Public on Oct 21, 2006
Title NRMRL test replicate02, EPA73 batch072104 430B chip
Sample type RNA
 
Source name mouse small intestinal cell culture, 5 hour infection
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 18, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 732.5 P 0.030976
AFFX-BioB-M_at 645.4 P 0.002556
AFFX-BioB-3_at 383.6 P 0.030976
AFFX-BioC-5_at 2304.0 P 0.000147
AFFX-BioC-3_at 2374.9 P 0.000060
AFFX-BioDn-5_at 2740.6 P 0.000044
AFFX-BioDn-3_at 13187.7 P 0.000110
AFFX-CreX-5_at 37200.5 P 0.000044
AFFX-CreX-3_at 53133.4 P 0.000044
AFFX-DapX-5_at 66.4 A 0.500000
AFFX-DapX-M_at 29.5 A 0.794288
AFFX-DapX-3_at 98.1 A 0.617411
AFFX-LysX-5_at 12.8 A 0.910522
AFFX-LysX-M_at 62.2 A 0.760937
AFFX-LysX-3_at 214.4 A 0.175328
AFFX-PheX-5_at 34.6 A 0.783476
AFFX-PheX-M_at 62.7 A 0.617401
AFFX-PheX-3_at 189.3 A 0.340661
AFFX-ThrX-5_at 48.2 A 0.804734
AFFX-ThrX-M_at 37.8 A 0.794288

Total number of rows: 22575

Table truncated, full table size 613 Kbytes.




Supplementary file Size Download File type/resource
GSM140715.CEL.gz 2.9 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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