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Sample GSM140717 Query DataSets for GSM140717
Status Public on Oct 21, 2006
Title NRMRL test replicate03, EPA73 batch072104 430B chip
Sample type RNA
 
Source name mouse small intestinal cell culture, 5 hour infection
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 18, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 315.1 A 0.089478
AFFX-BioB-M_at 285.5 A 0.078002
AFFX-BioB-3_at 58.0 A 0.411380
AFFX-BioC-5_at 1280.3 P 0.000446
AFFX-BioC-3_at 855.9 P 0.000095
AFFX-BioDn-5_at 1651.4 P 0.000225
AFFX-BioDn-3_at 8522.6 P 0.000581
AFFX-CreX-5_at 15871.4 P 0.000060
AFFX-CreX-3_at 24646.5 P 0.000044
AFFX-DapX-5_at 92.4 A 0.340661
AFFX-DapX-M_at 90.9 A 0.175328
AFFX-DapX-3_at 11.9 A 0.960339
AFFX-LysX-5_at 9.9 A 0.876428
AFFX-LysX-M_at 19.6 A 0.843268
AFFX-LysX-3_at 21.0 A 0.659352
AFFX-PheX-5_at 5.3 A 0.984817
AFFX-PheX-M_at 12.6 A 0.932322
AFFX-PheX-3_at 177.0 A 0.313723
AFFX-ThrX-5_at 33.2 A 0.794268
AFFX-ThrX-M_at 125.2 A 0.514890

Total number of rows: 22575

Table truncated, full table size 612 Kbytes.




Supplementary file Size Download File type/resource
GSM140717.CEL.gz 3.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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