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Sample GSM140724 Query DataSets for GSM140724
Status Public on Oct 21, 2006
Title NRMRL control replicate02, uninfected batch072104 430A chip
Sample type RNA
 
Source name mouse small intestinal cell culture, 5 hours
Organism Mus musculus
Characteristics MICcl2
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 18, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 83.9 M 0.054213
AFFX-BioB-M_at 94.7 P 0.007620
AFFX-BioB-3_at 38.1 A 0.116113
AFFX-BioC-5_at 229.3 P 0.000127
AFFX-BioC-3_at 200.3 P 0.000110
AFFX-BioDn-5_at 258.2 P 0.000095
AFFX-BioDn-3_at 1112.9 P 0.000581
AFFX-CreX-5_at 2825.3 P 0.000060
AFFX-CreX-3_at 3636.5 P 0.000044
AFFX-DapX-5_at 3.5 A 0.529760
AFFX-DapX-M_at 11.2 A 0.327079
AFFX-DapX-3_at 3.6 A 0.860518
AFFX-LysX-5_at 6.1 A 0.724854
AFFX-LysX-M_at 4.5 A 0.760937
AFFX-LysX-3_at 16.8 A 0.250796
AFFX-PheX-5_at 1.1 A 0.963431
AFFX-PheX-M_at 1.8 A 0.883887
AFFX-PheX-3_at 30.6 A 0.275146
AFFX-ThrX-5_at 2.4 A 0.868639
AFFX-ThrX-M_at 3.4 A 0.794268

Total number of rows: 22690

Table truncated, full table size 621 Kbytes.




Supplementary file Size Download File type/resource
GSM140724.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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