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Sample GSM140728 Query DataSets for GSM140728
Status Public on Oct 21, 2006
Title NRMRL control replicate04, uninfected batch072104 430A chip
Sample type RNA
 
Source name mouse small intestinal cell culture, 5 hours
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 18, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 50.2 A 0.239063
AFFX-BioB-M_at 38.9 A 0.108979
AFFX-BioB-3_at 35.5 A 0.275146
AFFX-BioC-5_at 186.2 P 0.000754
AFFX-BioC-3_at 132.1 P 0.000147
AFFX-BioDn-5_at 289.2 P 0.000110
AFFX-BioDn-3_at 1370.4 P 0.000857
AFFX-CreX-5_at 2484.2 P 0.000052
AFFX-CreX-3_at 3498.1 P 0.000044
AFFX-DapX-5_at 17.4 A 0.262827
AFFX-DapX-M_at 26.6 A 0.165861
AFFX-DapX-3_at 3.5 A 0.921998
AFFX-LysX-5_at 2.6 A 0.749204
AFFX-LysX-M_at 16.6 A 0.631562
AFFX-LysX-3_at 16.1 A 0.327079
AFFX-PheX-5_at 2.2 A 0.916408
AFFX-PheX-M_at 4.3 A 0.910522
AFFX-PheX-3_at 23.4 A 0.425956
AFFX-ThrX-5_at 4.2 A 0.804754
AFFX-ThrX-M_at 18.9 A 0.425962

Total number of rows: 22690

Table truncated, full table size 621 Kbytes.




Supplementary file Size Download File type/resource
GSM140728.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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