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Sample GSM140734 Query DataSets for GSM140734
Status Public on Oct 21, 2006
Title NRMRL test replicate02, EPA1UVHK batch072104 430A chip
Sample type RNA
 
Source name mouse small intestinal cell culture, 5 hour infection
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 18, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL339
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 52.1 A 0.239063
AFFX-BioB-M_at 57.4 A 0.083592
AFFX-BioB-3_at 10.1 A 0.514890
AFFX-BioC-5_at 182.7 P 0.000390
AFFX-BioC-3_at 109.1 P 0.000095
AFFX-BioDn-5_at 231.2 P 0.000972
AFFX-BioDn-3_at 1259.8 P 0.001796
AFFX-CreX-5_at 2103.9 P 0.000060
AFFX-CreX-3_at 2906.1 P 0.000044
AFFX-DapX-5_at 12.2 A 0.250796
AFFX-DapX-M_at 26.1 A 0.239063
AFFX-DapX-3_at 2.0 A 0.992380
AFFX-LysX-5_at 1.7 A 0.957038
AFFX-LysX-M_at 17.1 A 0.645547
AFFX-LysX-3_at 9.3 A 0.574038
AFFX-PheX-5_at 1.2 A 0.957038
AFFX-PheX-M_at 4.1 A 0.921998
AFFX-PheX-3_at 25.7 A 0.354453
AFFX-ThrX-5_at 5.0 A 0.737191
AFFX-ThrX-M_at 2.4 A 0.852061

Total number of rows: 22690

Table truncated, full table size 621 Kbytes.




Supplementary file Size Download File type/resource
GSM140734.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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