NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM140766 Query DataSets for GSM140766
Status Public on Oct 21, 2006
Title NRMRL test replicate05, EPA1UVHK batch072104 430B chip
Sample type RNA
 
Source name mouse small intestinal cell culture, 5 hour infection
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing Microarray Suite (MAS) 5.0 software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 18, 2006
Last update date Oct 20, 2006
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL340
Series (1)
GSE6065 Murine host cell response to Aeromonas infection

Data table header descriptions
ID_REF
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 289.7 A 0.089478
AFFX-BioB-M_at 226.9 A 0.116113
AFFX-BioB-3_at 141.6 A 0.205732
AFFX-BioC-5_at 836.6 P 0.000509
AFFX-BioC-3_at 563.8 P 0.000110
AFFX-BioDn-5_at 1299.6 P 0.000258
AFFX-BioDn-3_at 5804.0 P 0.001410
AFFX-CreX-5_at 10798.0 P 0.000060
AFFX-CreX-3_at 15045.4 P 0.000044
AFFX-DapX-5_at 92.3 A 0.147939
AFFX-DapX-M_at 108.4 A 0.205732
AFFX-DapX-3_at 42.4 A 0.772364
AFFX-LysX-5_at 22.4 A 0.772364
AFFX-LysX-M_at 26.2 A 0.843268
AFFX-LysX-3_at 71.8 A 0.156710
AFFX-PheX-5_at 14.2 A 0.868639
AFFX-PheX-M_at 11.0 A 0.953518
AFFX-PheX-3_at 88.2 A 0.455413
AFFX-ThrX-5_at 15.5 A 0.868639
AFFX-ThrX-M_at 35.9 A 0.559354

Total number of rows: 22575

Table truncated, full table size 612 Kbytes.




Supplementary file Size Download File type/resource
GSM140766.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap