GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM140871
Query DataSets for GSM140871
Status
Public on Jul 01, 2007
Title
HepG2 FA4
Sample type
RNA
Source name
HepG2 Cells
Organism
Homo sapiens
Characteristics
HepG2 cells stably transduced with lentiviral knockdown of JAM-A
Extracted molecule
total RNA
Extraction protocol
Rneasy kit
Label
Biotin
Label protocol
Affymetrix kit
Hybridization protocol
Affymetrix
Scan protocol
Affymetrix
Description
N/A
Data processing
D-Chip, PM/MM model with defaults
Submission date
Oct 18, 2006
Last update date
Apr 21, 2007
Contact name
Stephen A Duncan
E-mail(s)
duncanst@musc.edu
Phone
843-792-9104
Organization name
Medical University South Carolina
Department
Regenerative Medicine and Cell Biology
Lab
Duncan Lab
Street address
173 Ashley Avenue, BSB 6th Floor, Room 657A
City
Charleston
State/province
SC
ZIP/Postal code
29425
Country
USA
Platform ID
GPL571
Series (1)
GSE6080
JAM-A Knockdown in HepG2 Cells
Data table header descriptions
ID_REF
VALUE
D-ChIP Analysis
ABS_CALL
MAS
Data table
ID_REF
VALUE
ABS_CALL
AFFX-BioB-5_at
122.4
P
AFFX-BioB-M_at
175.5
P
AFFX-BioB-3_at
118.9
P
AFFX-BioC-5_at
365.7
P
AFFX-BioC-3_at
423.1
P
AFFX-BioDn-5_at
956.2
P
AFFX-BioDn-3_at
1847.7
P
AFFX-CreX-5_at
3710.6
P
AFFX-CreX-3_at
5067.8
P
AFFX-DapX-5_at
89.7
P
AFFX-DapX-M_at
175.9
P
AFFX-DapX-3_at
235.6
P
AFFX-LysX-5_at
12.4
P
AFFX-LysX-M_at
20.3
M
AFFX-LysX-3_at
50.2
P
AFFX-PheX-5_at
20.5
P
AFFX-PheX-M_at
23.9
P
AFFX-PheX-3_at
60.4
P
AFFX-ThrX-5_at
26.5
P
AFFX-ThrX-M_at
38.6
P
Total number of rows:
22277
Table truncated, full table size
386 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM140871.CEL.gz
1.9 Mb
(ftp)
(http)
CEL
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
