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Sample GSM1417186 Query DataSets for GSM1417186
Status Public on Jun 21, 2014
Title EV2
Sample type RNA
Source name 3T3 vector
Organism Mus musculus
Characteristics strain: C57BL6J
transduction: vector
cell type: Mouse Embryonic Fibroblasts
cell line: 3T3
Extracted molecule total RNA
Extraction protocol RNA was extracted using Qiagen Rneasy Mini Prep kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol-Direct Hybridization
Scan protocol Standard Illumina scanning protocol-Illumina iScan System
Description Replicate A2
Illumina® TotalPrep RNA Amplification Kit, manufactured by Ambion, Inc. 
Data processing The data were normalized using quantile normalization using genome studio software
Submission date Jun 20, 2014
Last update date Jun 21, 2014
Contact name Po-Yuan Tung
Organization name UC Davis
Lab Paul Knoepfler
Street address 2425 Stockton Blvd
City Sacramento
State/province CA
ZIP/Postal code 95817
Country USA
Platform ID GPL6885
Series (1)
GSE58709 Total Gene expression analysis of Dppa4-trandformed 3T3s

Data table header descriptions
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 84.9 0.59273
ILMN_2707227 104.8 0.00251
ILMN_2896528 178.5 0
ILMN_2721178 95.3 0.04261
ILMN_1227723 180.8 0
ILMN_3033922 942.9 0
ILMN_3092673 3123.7 0
ILMN_2730714 1639.6 0
ILMN_3162224 1010.5 0
ILMN_2816356 78.9 0.94987
ILMN_2808939 330.3 0
ILMN_2634564 283.8 0
ILMN_1216623 288.4 0
ILMN_1215157 518.4 0
ILMN_1228777 84.6 0.62782
ILMN_2737647 91.7 0.14787
ILMN_1216425 85.2 0.56642
ILMN_2734484 130.4 0
ILMN_2652961 92.4 0.12406
ILMN_2952292 89.9 0.2406

Total number of rows: 25697

Table truncated, full table size 607 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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