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Sample GSM1417187 Query DataSets for GSM1417187
Status Public on Jun 21, 2014
Title DPPA4 1
Sample type RNA
 
Source name 3T3 Dppa4
Organism Mus musculus
Characteristics strain: C57BL6J
transduction: mDppa4
cell type: Mouse Embryonic Fibroblasts
cell line: 3T3
Extracted molecule total RNA
Extraction protocol RNA was extracted using Qiagen Rneasy Mini Prep kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol-Direct Hybridization
Scan protocol Standard Illumina scanning protocol-Illumina iScan System
Description Replicate B
Illumina® TotalPrep RNA Amplification Kit, manufactured by Ambion, Inc. 
Data processing The data were normalized using quantile normalization using genome studio software
 
Submission date Jun 20, 2014
Last update date Jun 21, 2014
Contact name Po-Yuan Tung
E-mail(s) ptung@ucdavis.edu
Organization name UC Davis
Lab Paul Knoepfler
Street address 2425 Stockton Blvd
City Sacramento
State/province CA
ZIP/Postal code 95817
Country USA
 
Platform ID GPL6885
Series (1)
GSE58709 Total Gene expression analysis of Dppa4-trandformed 3T3s

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 92.1 0.1391
ILMN_2707227 91.5 0.16291
ILMN_2896528 127.9 0
ILMN_2721178 76.3 0.99373
ILMN_1227723 195.4 0
ILMN_3033922 288.1 0
ILMN_3092673 672.3 0
ILMN_2730714 1745.1 0
ILMN_3162224 1214.9 0
ILMN_2816356 87.6 0.40977
ILMN_2808939 374.4 0
ILMN_2634564 289.5 0
ILMN_1216623 292.1 0
ILMN_1215157 550.6 0
ILMN_1228777 84.9 0.65664
ILMN_2737647 90.8 0.20927
ILMN_1216425 90.4 0.23308
ILMN_2734484 145.9 0
ILMN_2652961 96.9 0.04887
ILMN_2952292 95.1 0.06767

Total number of rows: 25697

Table truncated, full table size 608 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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