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Sample GSM1417188 Query DataSets for GSM1417188
Status Public on Jun 21, 2014
Title DPPA4 2
Sample type RNA
Source name 3T3 Dppa4
Organism Mus musculus
Characteristics strain: C57BL6J
transduction: mDppa4
cell type: Mouse Embryonic Fibroblasts
cell line: 3T3
Extracted molecule total RNA
Extraction protocol RNA was extracted using Qiagen Rneasy Mini Prep kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol-Direct Hybridization
Scan protocol Standard Illumina scanning protocol-Illumina iScan System
Description Replicate B2
Illumina® TotalPrep RNA Amplification Kit, manufactured by Ambion, Inc. 
Data processing The data were normalized using quantile normalization using genome studio software
Submission date Jun 20, 2014
Last update date Jun 21, 2014
Contact name Po-Yuan Tung
Organization name UC Davis
Lab Paul Knoepfler
Street address 2425 Stockton Blvd
City Sacramento
State/province CA
ZIP/Postal code 95817
Country USA
Platform ID GPL6885
Series (1)
GSE58709 Total Gene expression analysis of Dppa4-trandformed 3T3s

Data table header descriptions
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 90.5 0.20175
ILMN_2707227 91.4 0.16291
ILMN_2896528 130.9 0
ILMN_2721178 96.2 0.04511
ILMN_1227723 250.6 0
ILMN_3033922 253.7 0
ILMN_3092673 551.9 0
ILMN_2730714 1830 0
ILMN_3162224 1213.6 0
ILMN_2816356 80.3 0.8985
ILMN_2808939 501.6 0
ILMN_2634564 245.6 0
ILMN_1216623 320.5 0
ILMN_1215157 585.8 0
ILMN_1228777 84.7 0.63283
ILMN_2737647 73.5 0.99624
ILMN_1216425 84.2 0.67544
ILMN_2734484 137.6 0
ILMN_2652961 82.6 0.79449
ILMN_2952292 88.7 0.30201

Total number of rows: 25697

Table truncated, full table size 605 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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