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Sample GSM1417190 Query DataSets for GSM1417190
Status Public on Jun 21, 2014
Title Myc 2
Sample type RNA
Source name 3T3 c-Myc
Organism Mus musculus
Characteristics strain: C57BL6J
transduction: c-Myc
cell type: Mouse Embryonic Fibroblasts
cell line: 3T3
Extracted molecule total RNA
Extraction protocol RNA was extracted using Qiagen Rneasy Mini Prep kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol-Direct Hybridization
Scan protocol Standard Illumina scanning protocol-Illumina iScan System
Description Replicate C2
Illumina® TotalPrep RNA Amplification Kit, manufactured by Ambion, Inc. 
Data processing The data were normalized using quantile normalization using genome studio software
Submission date Jun 20, 2014
Last update date Jun 21, 2014
Contact name Po-Yuan Tung
Organization name UC Davis
Lab Paul Knoepfler
Street address 2425 Stockton Blvd
City Sacramento
State/province CA
ZIP/Postal code 95817
Country USA
Platform ID GPL6885
Series (1)
GSE58709 Total Gene expression analysis of Dppa4-trandformed 3T3s

Data table header descriptions
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 84.4 0.6792
ILMN_2707227 88.6 0.33459
ILMN_2896528 185.5 0
ILMN_2721178 82.8 0.81454
ILMN_1227723 169.8 0
ILMN_3033922 735 0
ILMN_3092673 2664.4 0
ILMN_2730714 1944.3 0
ILMN_3162224 1025.9 0
ILMN_2816356 83.5 0.75439
ILMN_2808939 418.3 0
ILMN_2634564 329.3 0
ILMN_1216623 409.6 0
ILMN_1215157 782.8 0
ILMN_1228777 83.3 0.76942
ILMN_2737647 83.9 0.72556
ILMN_1216425 81.4 0.87845
ILMN_2734484 160 0
ILMN_2652961 88.6 0.33835
ILMN_2952292 110.3 0.00376

Total number of rows: 25697

Table truncated, full table size 611 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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