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Sample GSM1417191 Query DataSets for GSM1417191
Status Public on Jun 21, 2014
Title SV40 1
Sample type RNA
Source name 3T3 SV40
Organism Mus musculus
Characteristics strain: C57BL6J
transduction: SV40
cell type: Mouse Embryonic Fibroblasts
cell line: 3T3
Extracted molecule total RNA
Extraction protocol RNA was extracted using Qiagen Rneasy Mini Prep kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol-Direct Hybridization
Scan protocol Standard Illumina scanning protocol-Illumina iScan System
Description Replicate D
Illumina® TotalPrep RNA Amplification Kit, manufactured by Ambion, Inc. 
Data processing The data were normalized using quantile normalization using genome studio software
Submission date Jun 20, 2014
Last update date Jun 21, 2014
Contact name Po-Yuan Tung
Organization name UC Davis
Lab Paul Knoepfler
Street address 2425 Stockton Blvd
City Sacramento
State/province CA
ZIP/Postal code 95817
Country USA
Platform ID GPL6885
Series (1)
GSE58709 Total Gene expression analysis of Dppa4-trandformed 3T3s

Data table header descriptions
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 83.5 0.77444
ILMN_2707227 105.5 0.01253
ILMN_2896528 147.1 0
ILMN_2721178 92.2 0.16541
ILMN_1227723 144.8 0
ILMN_3033922 409.9 0
ILMN_3092673 1114.8 0
ILMN_2730714 1383.8 0
ILMN_3162224 1427 0
ILMN_2816356 82.6 0.82206
ILMN_2808939 553.7 0
ILMN_2634564 218.5 0
ILMN_1216623 271 0
ILMN_1215157 635.6 0
ILMN_1228777 79.1 0.96241
ILMN_2737647 90.8 0.21805
ILMN_1216425 89.5 0.28571
ILMN_2734484 141.2 0
ILMN_2652961 87.5 0.43985
ILMN_2952292 93.2 0.12531

Total number of rows: 25697

Table truncated, full table size 612 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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